PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015515
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 389aa    MW: 43235.9 Da    PI: 4.7494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015515genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19114163255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Cla015515 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 163
                69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32114173IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22114173IPR016177DNA-binding domain
CDDcd000186.08E-33114172No hitNo description
PROSITE profilePS5103224.092114171IPR001471AP2/ERF domain
SMARTSM003802.1E-36114177IPR001471AP2/ERF domain
PRINTSPR003671.2E-11115126IPR001471AP2/ERF domain
PfamPF008478.9E-12115163IPR001471AP2/ERF domain
PRINTSPR003671.2E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCGGAIISGF IPPTRSRRVT GEHLWPNLKK PAFGNQFSKP VKSDIIDIDD DFETDFQHFK  60
DDSDLDFDVE ELVDIKPLSF SAGGNPPLPS ARVSKSVEFS GQAEKSAKRK RKNQYRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PDEAPRTSGK  180
RSAKTNLQEP LPKTSLAKTQ TDLIQNNKFV NSSDEEYFST VGFLEEKPLT NQLVNMNSFS  240
ANVDGAIKTS PPSSDVAPMY FNSDQGSNSF DYSDFGWGEQ GAKTPEISSF LSAAMENEDS  300
YFVEDASPRK KVKYSPENTV VSQGSEKTLS EELSSFEPEM KYFQMPYLDG SWDASMDAFL  360
AGETGNQDGG NSVDLWTFDD LAGMVGSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21114171260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141728.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0A0K9C00.0A0A0A0K9C0_CUCSA; Uncharacterized protein
STRINGVIT_09s0002g00470.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-81related to AP2 12